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Unable to Boolean Union two intersecting parts

Greetings, everyone!
This is my first project on OnShape, and one of my first CAD projects in general, and it has been going decently well so far. I joined one extruded shape to another, however when I tried to do so with the second extruded shape, it will join them, but I can still see the edges and it exists as a separate shape when performing actions such as chamfering? It seems to join any other shape except this particular one. I looked around a bit on the forums, and I've made sure they're intersecting. Any advice would be greatly appreciated!
https://cad.onshape.com/documents/44e1cffda40bbd7b81545355/w/c70e61c1b402251b6cbd133a/e/d60b20a11d6d481519df011c?renderMode=0&uiState=64e293707fc1ab2ae3cc11d3
This is my first project on OnShape, and one of my first CAD projects in general, and it has been going decently well so far. I joined one extruded shape to another, however when I tried to do so with the second extruded shape, it will join them, but I can still see the edges and it exists as a separate shape when performing actions such as chamfering? It seems to join any other shape except this particular one. I looked around a bit on the forums, and I've made sure they're intersecting. Any advice would be greatly appreciated!
https://cad.onshape.com/documents/44e1cffda40bbd7b81545355/w/c70e61c1b402251b6cbd133a/e/d60b20a11d6d481519df011c?renderMode=0&uiState=64e293707fc1ab2ae3cc11d3
0
Answers
This is missing some smaller details, but here's a pass at the main shape in 7 features. I deleted some of the random broken stuff from the import and I transformed the STL to be more usefully aligned with the default planes/origin.
https://cad.onshape.com/documents/1ab96201fbe08671c0f3491d/w/c5fa36123ddaf572c8397753/e/e80303b1dad84a27acd42d36